miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159750254|gb|EG378458.1|EG378458 GCATTTTTNNNTTTTTTTTTTGCGGAGTACAAAGCACTGCTAACATTCTGCTGGAAAGTTTGGTCGCTGTGGGGTACTCC
CTCCGTCCGATAGCTTGCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACATTTTACAATGTACAAGGAGTCATGCG
TGTTCTGCCAGTTCTTTGATGTCATATCCAGGATTTCACAAGTACTTTATGCATTGTCATCCCAGGAAACAGGTTTCACT
TTCAAATGTTACATAAATAATAGCCTAGTCAAAAGTGAAACGAACCCTAACACTGATTTTACTTTATCACAACATAGCGG
CCTCAACTACCTCCACTTGTCTCTTAGTTCCTTTTTCTCAGACCAAATCCAAGTAACGAAAAGAGCAGCAACCAATGCGA
CAATAGTAATTAGAAGAAGGGCATAACTGAATTCATCGGTGAGTGAATCATAGGTTCTTGATGGAGCAAGCCGAGTGTAG
AAGAGATCCACACCATATGTGAAAACAAGAGTAGTGGACTCCAACTTTGCAGGAATAGAAACAATTCCTCGCAGGGCTTC
CACTTGAAGAGAGTGCGTCACATAGGACTGTGGAATAATAGGCAAAGAATCTGTTAATGGTATAATACCCTCTTCTTTCT
CTTGTTGTGTGGGATTCAGTGAACGGCGTGGGTCAAGAAAGCGCTTGTCAAGTGCCAAAACCTGGTCACCAATCGTGCCA
ATGNNNAGCTGCTTGGAAGTGATACCCTTGGCTGTTTGTGTAACTGCCATTGCCT




Most similar to sp|Q5R7K6|K0090_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R7K6|K0090_PONAB Uncharacterized protein KIAA0090 homolog
            OS=Pongo abelii PE=2 SV=1
          Length = 996

 Score =  103 bits (257), Expect = 1e-21
 Identities = 54/148 (36%), Positives = 82/148 (55%)
 Frame = -3

Query: 773  AMAVTQTAKGITSKQLXIGTIGDQVLALDKRFLDPRRSLNPTQQEKEEGIIPLTDSLPII 594
            AM  T T +GITS+ L IG     +L+L K  LDPRR   PT+Q +EE +IP +  + I 
Sbjct: 849  AMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIH 908

Query: 593  PQSYVTHSLQVEALRGIVSIPAKLESTTLVFTYGVDLFYTRLAPSRTYDSLTDEFSYXXX 414
             + ++ ++  V  +RGI + P+ LEST LV  YG+D++ TR+ PS+ +D L D++ Y   
Sbjct: 909  AERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLI 968

Query: 413  XXXXXXXXXXLFVTWIWSEKKELRDKWR 330
                        +T   ++ K L   WR
Sbjct: 969  SSVLFGLVFATMITKRLAQVKLLNRAWR 996